BBC: BioBankCloud

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Revision as of 14:04, 20 December 2012

• Research Line(s): Fault and Intrusion Tolerance in Open Distributed Systems (FIT), Timeliness and Adaptation in Dependable Systems (TADS)
• Team at FCUL: Researchers including

Publications

• Ricardo Mendes, Tiago Oliveira, Vinicius Vielmo Cogo, Nuno Ferreira Neves, Alysson Bessani, “CHARON: A Secure Cloud-of-Clouds System for Storing and Sharing Big Data”, IEEE Transactions on Cloud Computing, vol. 9, no. 4, pp. 1349–1361, Oct. 2021. 10.1109/TCC.2019.2916856

• Vinicius Vielmo Cogo, Alysson Bessani, “Enabling the Efficient, Dependable Cloud-based Storage of Human Genomes”, in 1st Workshop on Distributed and Reliable Storage Systems (DRSS'19), Oct. 2019.

• Vinicius Vielmo Cogo, Alysson Bessani, Francisco M. Couto, Margarida Gama-Carvalho, Maria Fernandes, Paulo Esteves-Verissimo, “How can photo sharing inspire sharing genomes?”, in Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB'17), Porto, Portugal, Jun. 2017.

• Vinicius Vielmo Cogo, Alysson Bessani, “From Data Islands to Sharing Data in the Cloud: the Evolution of Data Integration in Biological Data Repositories”, Communications and Innovations Gazette (ComInG), vol. 1, no. 1, pp. 1–11, Jan. 2016.

• Vinicius Vielmo Cogo, Alysson Bessani, Francisco M. Couto, Paulo Verissimo, “A High-Throughput Method to Detect Privacy-Sensitive Human Genomic Data”, in Proceedings of the Workshop on Privacy in the Electronic Society (WPES 2015), Denver, CO, US, Oct. 2015.

• Alysson Bessani, Jörgen Brandt, Marc Bux, Vinicius Vielmo Cogo, Lora Dimitrova, Jim Dowling, Ali Gholami, Kamal Hakimzadeh, Michael Hummel, Mahmoud Ismail, Erwin Laure, Ulf Leser, Jan-Eric Litton, Roxanna Martinez, Jane Reichel, Salman Niazi, Karin Zimmermann, “BiobankCloud: a Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets”, in Proceedings of the 1st Int. Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2015), Hawaii, US, Sept. 2015.

• Fernando Alves, Vinicius Vielmo Cogo, Sebastian Wandelt, Ulf Leser, Alysson Bessani, “On-Demand Indexing for Referential Compression of DNA Sequences”, PLoS ONE, vol. 10, no. 7, pp. e0132460, Jul. 2015. DOI: 10.1371/journal.pone.0132460

• Tobias Distler, Christopher Bahn, Alysson Bessani, Frank Fischer, Flavio Junqueira, “Extensible Distributed Coordination”, in Proceedings of the 10th ACM European Conference on Computer Systems (EuroSys), Bordeux, France, Apr. 2015.

• Fabio Botelho, Alysson Bessani, Fernando Ramos, Paulo Ferreira, “On the Design of Practical Fault-Tolerant SDN Controllers”, in Proceedings of the 3rd European Workshop on Software Defined Networks (EWSDN), Budapest, Hungary, Sept. 2014.

• Fernando Alves, Vinicius Vielmo Cogo, Alysson Bessani, “Indexação sob Demanda para a Compressão Referencial de Ficheiros de ADN”, in Proceedings of the 6th Simpósio de Informática (INFORUM), Porto, Portugal, Sept. 2014, pp. 5–16.

• Tiago Oliveira, Ricardo Mendes, Alysson Bessani, “Sharing Files Using Cloud Storage Services”, in Proceedings of the 2nd Workshop on Dependability and Interoperability in Heterogeneous Clouds (DIHC), co-­located with Euro­-Par, Aug. 2014.

• Alysson Bessani, Ricardo Mendes, Tiago Oliveira, Nuno Ferreira Neves, Miguel Correia, Marcelo Pasin, Paulo Verissimo, “SCFS: A Shared Cloud-backed File System”, in Proceedings of the 2014 USENIX Annual Technical Conference (USENIX-ATC), Philadelphia, PA, US, Jun. 2014.

• Vinicius Vielmo Cogo, Alysson Bessani, “BiobankCloud - Platform as a Service for Biobanking”, in Poster in the 2nd Annual Next Generation Sequencing Data Congress, London, UK, May 2014.

• Paulo Verissimo, Alysson Bessani, “E-biobanking: What Have You Done to My Cell Samples?”, IEEE Security & Privacy, vol. 11, no. 6, pp. 62–65, Dec. 2013.

BibTeX

Navigators - BBC project

Projects

Current projects:

VEDLIoT, SATO, ADMORPH, SEAL, AQUAMON, UPVN, REDBOOK, ThreatAdapt, SEL, Xivt

Past projects:

TCLOUDS, MASSIF, MAFTIA, RESIST NoE, DiSIEM, KARYON, HIDENETS, CORTEX, CRUTIAL, TRONE, SITAN, ReD, IRCoC, DIVERSE, CloudFIT, READAPT, REGENESYS, RC-Clouds, TACID, DARIO, RITAS, AJECT, MICRA, DEAR-COTS, COPE, DEFEATS, MOOSCO, TOPCOM, RE:DY, NORTH, Abyss, SUPERCLOUD, COST Action IC1402, SEGRID, BioBankCloud, SAPIENT, PROPHECY, SecFuNet, FTH-Grid, AIR-II, AIR, ESFORS, CaberNet, GODC, BROADCAST, CoDiCom, Delta-4, RAPTOR